drop_low_sequence_length: Drops populations from main data frame when sequence length...

In EvolEcolGroup/mtDNAcombine: R package to download, combine, and curate sequences from public databases

Description

drop_low_sequence_length

Usage

drop_low_sequence_length(info_df, min_length)

Arguments

info_df	expected to be data frame of same structure as info_df built under earlier functions. Expected column names are 'spp_name', 'haplo_number', 'sequence_length', 'sample_size', 'max_step'
min_length	minimum length of sequence before user considers data will be uninformative

Details

Remove populations that, after alignment, only have sequence data of length less than a threshold value.

Find and drop from master list populations that have insufficient bp to be valuable for further downstream analysis - value set by user.

EvolEcolGroup/mtDNAcombine documentation built on July 8, 2021, 10:30 p.m.