load_accession_list: Loads list of accession numbers

In EvolEcolGroup/mtDNAcombine: R package to download, combine, and curate sequences from public databases

Description

load_accession_list

Usage

load_accession_list(accession_file_name)

Arguments

accession_file_name

user provided file which lists accession numbers. Should be a .csv or .txt file. No header.

Details

This function reads in list of accession numbers provided by the user and cleans up formatting (such as differences between "accession number" and "accession version" (e.g. xxxx vs xxxx.1)). Also any accession numbers starting with '[XX]_' are reviewed. These are RefSeq accessions and are known to frequently be duplicates of other accessions in GenBank. If the "original" accession is in the accession list already the '[XX]_' accession number will be removed.

EvolEcolGroup/mtDNAcombine documentation built on July 8, 2021, 10:30 p.m.