R/IBTSNeAtl_map.R
In Franvgls/NeAtlIBTS: R Library for the Northeastern Atlantic & NS IBTS Surveys
Defines functions
IBTSNeAtl_map
Documented in
IBTSNeAtl_map
#' Function IBTSNeAtl_map plots the map with all the surveys **STILL ON DEVELOPMENT**
#'
#' #' @description
# Produces a map from the shapefiles that define the IBTSNeAtl Surveys from Scotland
#' to Cádiz, Still needs to include the shapefiles within the package, or right references.
#'
#' @details
#' The default limits for the IBTS including the North Sea or not, but the script could
#' be used to get maps all arround the world playing with nl,sl and xlims
#'
#' @param nl = 61.5 northernmost limit of the map
#' @param sl = 35 Southernmost limit of the map
#' @param leg = TRUE if TRUE includes the legend with the colors of the surveys
#' @param cex.leg = .7 Size of the legend
#' @param dens = 30 density of the shading lines for all the surveys
#' @param ICESdiv = TRUE if TRUE plots the IBTS divisions behind the shapefiles
#' @param ICESrect = FALSE if TRUE plots the lines of the ICES statistic rectangles
#' @param ICESlab = FALSE if TRUE plots labs por ICES rectangles
#' @param ICESlabcex tamaño del ICESlab en cex, .5 por defecto subirlo si se quiere más grande
#' @param NS = FALSE if TRUE includes the ICES rectangles only for the North Sea area
#' @param bathy = TRUE if TRUE plots the isobaths under the behind the shapefiles
#' @param bw = True plots the map with land in grey, if F in light brown (burlywood3)
#' @param bords = TRUE plots the borders o the countries, FALSE leaves dashed lines
#' @param axlab= .8 decides the size of the axis numbers
#' @param out = format of the output, can be "def" default device, "pdf", "tiff" or "png"
#' @param nfile = name for the output file
#' @param shpdir = path to the folder with the shapefiles
#' @param load = T or F to load all the shapes files.
#' @examples IBTSNeAtl_map(out="def",dens=0,nl=45,leg=F,load=TRUE,ICESrect = T);text(stat_y~stat_x,Area,labels=ICESNAME,cex=.8,font=4);text(stat_y~stat_x,Area,labels=Area,cex=.6,pos=1,col=2)
#' @export
IBTSNeAtl_map<-function(nl=60.5,sl=36.0,xlims=c(-18,3),leg=TRUE,cex.leg=.7,dens=30,load=TRUE,ICESdiv=TRUE,ICESrect=FALSE,ICESlab=F,ICESlabcex=.8,NS=TRUE,bathy=TRUE,bw=FALSE,axlab=.8,bords=TRUE,out="def",nfile="NeAtlIBTS_map",lwdl=.1,shpdir="c:/GitHubRs/shapes/") {
library(mapdata)
library(maptools)
library(maps)
library(rgdal)
if (all(c(sl,nl)<0) | all(c(sl,nl)>0)) {
largo=rev(abs(nl-sl))*10
} else largo=(nl-sl)
if (xlims[2] < 0) {
ancho<- diff(rev(abs(xlims)))*10
} else ancho<- diff(xlims)*10
ices.div<-readOGR(paste0(shpdir,"ices_div.dbf"),"ices_div",verbose = F)
bath100<-readOGR(paste0(shpdir,"100m.dbf"),"100m",verbose = F)
bathy.geb<-readOGR(paste0(shpdir,"bathy_geb.dbf"),"bathy_geb",verbose = F)
SWC_Q1<-readOGR(paste0(shpdir,"SWC_Q1.dbf"),"SWC_Q1",verbose = F)
SWC_Q1_w84<-spTransform(SWC_Q1,CRS("+proj=longlat +datum=WGS84"))
SWC_Q3<-readOGR(paste0(shpdir,"SWC_Q3.dbf"),"SWC_Q3",verbose = F)
SWC_Q3_w84<-spTransform(SWC_Q3,CRS("+proj=longlat +datum=WGS84"))
IGFS<-readOGR(paste0(shpdir,"IGFS.dbf"),"IGFS",verbose = F)
IGFS_w84<-spTransform(IGFS,CRS("+proj=longlat +datum=WGS84"))
NIGFS<-readOGR(paste0(shpdir,"NI_IBTS.dbf"),"NI_IBTS",verbose = F)
NIGFS_w84<-spTransform(NIGFS,CRS("+proj=longlat +datum=WGS84"))
CGFS<-readOGR(paste0(shpdir,"CGFS_stratum.dbf"),"CGFS_stratum",verbose = F)
Porc<-readOGR(paste0(shpdir,"Porcupine.dbf"),"Porcupine",verbose = F)
Porc_w84<-spTransform(Porc,CRS("+proj=longlat +datum=WGS84"))
EVHOE<-readOGR(paste0(shpdir,"EVHOE.dbf"),"EVHOE",verbose = F)
EVHOE_w84<-spTransform(EVHOE,CRS("+proj=longlat +datum=WGS84"))
Sp_North_w84<-rgdal::readOGR(paste0(shpdir,"Sp_North.WGS84.dbf"),verbose = F) #"Sp_North",
#Sp_North_w84<-spTransform(Sp_North,CRS("+proj=longlat +datum=WGS84"))
#Sp_North<-sf::st_read(paste0(shpdir,"Sp_North.dbf"))
Sp_Cadiz<-readOGR(paste0(shpdir,"Sp_Cadiz.dbf"),verbose = F) #"Sp_Cadiz"
Sp_Cadiz_w84<-spTransform(Sp_Cadiz,CRS("+proj=longlat +datum=WGS84"))
PT_IBTS<-readOGR(paste0(shpdir,"PT_IBTS_2015.dbf"),"PT_IBTS_2015",verbose = F)
switch(out,
"pdf" = pdf(file = paste0(nfile,".pdf")),
"tiff" = tiff(filename=paste0(nfile,".tiff"),width=660*ancho/largo,height=800*largo/ancho),
"png" = png(filename=paste0(nfile,".png"),bg="transparent",type="cairo",width=round(800*ancho/largo),height=round(800*largo/ancho)))
par(mar=c(3.5,2,2,2)+0.1)
# windows()
maps::map(database = "worldHires", xlim = xlims, ylim = c(sl,nl),type="n")
if (bathy) {
sp::plot(bath100,add=T,col=gray(.85),lwd=.1)
sp::plot(bathy.geb[bathy.geb$DEPTH!=100,],add=T,col=gray(.85),lwd=.1)
}
# if (grid) grid(col=gray(.8),lwd=.5)
if (ICESdiv) sp::plot(ices.div,add=T,col=NA,border="burlywood")
if (all(xlims < 0)) {
degs = seq(xlims[1],xlims[2],ifelse(ancho>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ W))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
}
if (all(xlims > 0)) {
degs = seq(xlims[1],xlims[2],ifelse(ancho>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ E))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
}
if (xlims[1]<0 & xlims[2]>0) {
degs = seq(xlims[1],-1,ifelse(abs(diff(xlims))>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ W))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
degs = seq(1,xlims[2],ifelse(abs(diff(xlims))>1,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ E))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
degs = c(0)
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ ""))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
}
if (all(c(sl,nl) < 0)) {
degs = seq(sl,nl,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ S))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
}
if (all(c(sl,nl) > 0)) {
degs = seq(sl,nl,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ N))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
}
if (!all(c(sl,nl) >0)) {
degs = seq(sl,-5,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ S))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
degs = seq(5,nl,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ N))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
degs = c(0)
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ ""))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
}
if (NS){
for (lat in seq(55,66,by=.5)) {segments(x0=c(-4),y0=lat,x1=12,y1=lat,col=gray(.85),lwd=.01) }
for (lat in seq(49.5,55,by=.5)) {segments(x0=c(-2),y0=lat,x1=12,y1=lat,col=gray(.85),lwd=.01) }
for (long in seq(c(-4),12,by=1)) {segments(x0=long,y0=55,x1=long,y1=65,col=gray(.85),lwd=.01) }
for (long in seq(c(-2),12,by=1)) {segments(x0=long,y0=49.5,x1=long,y1=55,col=gray(.85),lwd=.01) }
}
if (ICESlab) text(c(stat_y+.22)~stat_x,Area,label=ICESNAME,cex=ICESlabcex,font=2)
if (ICESrect) {
abline(h=seq(30,65,by=.5),col=gray(.3),lwd=.2)
abline(v=seq(-44,68),col=gray(.3),lwd=.2)
}
rug(seq(c(sl+.5),c(nl+.5),by=1),.005,side=2,lwd=lwdl,quiet=TRUE)
rug(seq(c(xlims[1]+.5),c(xlims[2]+.5),by=1),.005,side=1,lwd=lwdl,quiet=TRUE)
rug(seq(c(xlims[1]+.5),c(xlims[2]+.5),by=1),.005,side=3,lwd=lwdl,quiet=TRUE)
rug(seq(c(sl+.5),c(nl+.5),by=1),.005,side=4,lwd=lwdl,quiet=TRUE)
if (load){
maps::map(SWC_Q1_w84,SWC_Q1_w84$Name,add=T,col=gray(.4),lwd=.1,fill=T,dens=0,angle=0)
maps::map(SWC_Q3_w84,SWC_Q3_w84$Name,add=T,col=gray(.4),lwd=.1,fill=T,dens=0,angle=45)
maps::map(NIGFS_w84,NIGFS_w84$NAME,add=T,col=gray(.4),lwd=.1,fill=T,dens=0,angle=90)
sp::plot(SWC_Q1_w84,add=T,col=gray(.4),lwd=.01,dens=dens,angle=0)
sp::plot(SWC_Q3_w84,add=T,col=2,lwd=.01,dens=dens,angle=45)
sp::plot(NIGFS_w84,add=T,col=3,lwd=.01,dens=dens,angle=45)
sp::plot(IGFS_w84,add=T,col=4,lwd=.01,dens=dens,angle=135)
sp::plot(Porc_w84,add=T,col=5,lwd=.01,dens=dens,angle=180)
sp::plot(CGFS,add=T,col=6,lwd=.1,dens=dens,angle=225)
sp::plot(EVHOE_w84,add=T,col=gray(.4),lwd=.1,dens=dens,angle=270)
sp::plot(Sp_North_w84,add=T,col=2,lwd=.1,dens=dens,angle=315)
sp::plot(PT_IBTS,add=T,col=3,lwd=.1,dens=dens,angle=0)
sp::plot(Sp_Cadiz_w84,add=T,col=4,lwd=.1,dens=dens,angle=45)
}
maps::map(database = "worldHires",xlim = xlims, ylim = c(sl,nl),fill=T,col=ifelse(bw,"gray","burlywood3"),add=T,fg="blue",interior = T,boundary = T,lty=1,lwd=.05)
#maps::map(database = "worldHires",xlim = xlims, ylim = c(sl,nl),fill=T,col=ifelse(bw,"gray",add=T,bg="blue",interior=bords)
box()
if (leg) legend("bottomleft",c("UK-SCOSWCGFS","UK-SCOROC","UK-NIGFS","IE-IGFS","SP-PORC","FR-CGFS",
"FR-EVHOE","SP-NORTH","PT-PGFS","SP-GCGFS"),fill=c(gray(.4),2:6),
cex=cex.leg,inset=c(.03,.2),title="Surveys",bg="white",text.col="black",
dens=dens,angle=seq(0,315,by=45))
if (out!="def") dev.off()
}
Franvgls/NeAtlIBTS documentation built on June 13, 2022, 6:26 p.m.
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Defines functions IBTSNeAtl_map
Documented in IBTSNeAtl_map
#' Function IBTSNeAtl_map plots the map with all the surveys **STILL ON DEVELOPMENT**
#'
#' #' @description
# Produces a map from the shapefiles that define the IBTSNeAtl Surveys from Scotland
#' to Cádiz, Still needs to include the shapefiles within the package, or right references.
#'
#' @details
#' The default limits for the IBTS including the North Sea or not, but the script could
#' be used to get maps all arround the world playing with nl,sl and xlims
#'
#' @param nl = 61.5 northernmost limit of the map
#' @param sl = 35 Southernmost limit of the map
#' @param leg = TRUE if TRUE includes the legend with the colors of the surveys
#' @param cex.leg = .7 Size of the legend
#' @param dens = 30 density of the shading lines for all the surveys
#' @param ICESdiv = TRUE if TRUE plots the IBTS divisions behind the shapefiles
#' @param ICESrect = FALSE if TRUE plots the lines of the ICES statistic rectangles
#' @param ICESlab = FALSE if TRUE plots labs por ICES rectangles
#' @param ICESlabcex tamaño del ICESlab en cex, .5 por defecto subirlo si se quiere más grande
#' @param NS = FALSE if TRUE includes the ICES rectangles only for the North Sea area
#' @param bathy = TRUE if TRUE plots the isobaths under the behind the shapefiles
#' @param bw = True plots the map with land in grey, if F in light brown (burlywood3)
#' @param bords = TRUE plots the borders o the countries, FALSE leaves dashed lines
#' @param axlab= .8 decides the size of the axis numbers
#' @param out = format of the output, can be "def" default device, "pdf", "tiff" or "png"
#' @param nfile = name for the output file
#' @param shpdir = path to the folder with the shapefiles
#' @param load = T or F to load all the shapes files.
#' @examples IBTSNeAtl_map(out="def",dens=0,nl=45,leg=F,load=TRUE,ICESrect = T);text(stat_y~stat_x,Area,labels=ICESNAME,cex=.8,font=4);text(stat_y~stat_x,Area,labels=Area,cex=.6,pos=1,col=2)
#' @export
IBTSNeAtl_map<-function(nl=60.5,sl=36.0,xlims=c(-18,3),leg=TRUE,cex.leg=.7,dens=30,load=TRUE,ICESdiv=TRUE,ICESrect=FALSE,ICESlab=F,ICESlabcex=.8,NS=TRUE,bathy=TRUE,bw=FALSE,axlab=.8,bords=TRUE,out="def",nfile="NeAtlIBTS_map",lwdl=.1,shpdir="c:/GitHubRs/shapes/") {
library(mapdata)
library(maptools)
library(maps)
library(rgdal)
if (all(c(sl,nl)<0) | all(c(sl,nl)>0)) {
largo=rev(abs(nl-sl))*10
} else largo=(nl-sl)
if (xlims[2] < 0) {
ancho<- diff(rev(abs(xlims)))*10
} else ancho<- diff(xlims)*10
ices.div<-readOGR(paste0(shpdir,"ices_div.dbf"),"ices_div",verbose = F)
bath100<-readOGR(paste0(shpdir,"100m.dbf"),"100m",verbose = F)
bathy.geb<-readOGR(paste0(shpdir,"bathy_geb.dbf"),"bathy_geb",verbose = F)
SWC_Q1<-readOGR(paste0(shpdir,"SWC_Q1.dbf"),"SWC_Q1",verbose = F)
SWC_Q1_w84<-spTransform(SWC_Q1,CRS("+proj=longlat +datum=WGS84"))
SWC_Q3<-readOGR(paste0(shpdir,"SWC_Q3.dbf"),"SWC_Q3",verbose = F)
SWC_Q3_w84<-spTransform(SWC_Q3,CRS("+proj=longlat +datum=WGS84"))
IGFS<-readOGR(paste0(shpdir,"IGFS.dbf"),"IGFS",verbose = F)
IGFS_w84<-spTransform(IGFS,CRS("+proj=longlat +datum=WGS84"))
NIGFS<-readOGR(paste0(shpdir,"NI_IBTS.dbf"),"NI_IBTS",verbose = F)
NIGFS_w84<-spTransform(NIGFS,CRS("+proj=longlat +datum=WGS84"))
CGFS<-readOGR(paste0(shpdir,"CGFS_stratum.dbf"),"CGFS_stratum",verbose = F)
Porc<-readOGR(paste0(shpdir,"Porcupine.dbf"),"Porcupine",verbose = F)
Porc_w84<-spTransform(Porc,CRS("+proj=longlat +datum=WGS84"))
EVHOE<-readOGR(paste0(shpdir,"EVHOE.dbf"),"EVHOE",verbose = F)
EVHOE_w84<-spTransform(EVHOE,CRS("+proj=longlat +datum=WGS84"))
Sp_North_w84<-rgdal::readOGR(paste0(shpdir,"Sp_North.WGS84.dbf"),verbose = F) #"Sp_North",
#Sp_North_w84<-spTransform(Sp_North,CRS("+proj=longlat +datum=WGS84"))
#Sp_North<-sf::st_read(paste0(shpdir,"Sp_North.dbf"))
Sp_Cadiz<-readOGR(paste0(shpdir,"Sp_Cadiz.dbf"),verbose = F) #"Sp_Cadiz"
Sp_Cadiz_w84<-spTransform(Sp_Cadiz,CRS("+proj=longlat +datum=WGS84"))
PT_IBTS<-readOGR(paste0(shpdir,"PT_IBTS_2015.dbf"),"PT_IBTS_2015",verbose = F)
switch(out,
"pdf" = pdf(file = paste0(nfile,".pdf")),
"tiff" = tiff(filename=paste0(nfile,".tiff"),width=660*ancho/largo,height=800*largo/ancho),
"png" = png(filename=paste0(nfile,".png"),bg="transparent",type="cairo",width=round(800*ancho/largo),height=round(800*largo/ancho)))
par(mar=c(3.5,2,2,2)+0.1)
# windows()
maps::map(database = "worldHires", xlim = xlims, ylim = c(sl,nl),type="n")
if (bathy) {
sp::plot(bath100,add=T,col=gray(.85),lwd=.1)
sp::plot(bathy.geb[bathy.geb$DEPTH!=100,],add=T,col=gray(.85),lwd=.1)
}
# if (grid) grid(col=gray(.8),lwd=.5)
if (ICESdiv) sp::plot(ices.div,add=T,col=NA,border="burlywood")
if (all(xlims < 0)) {
degs = seq(xlims[1],xlims[2],ifelse(ancho>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ W))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
}
if (all(xlims > 0)) {
degs = seq(xlims[1],xlims[2],ifelse(ancho>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ E))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
}
if (xlims[1]<0 & xlims[2]>0) {
degs = seq(xlims[1],-1,ifelse(abs(diff(xlims))>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ W))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
degs = seq(1,xlims[2],ifelse(abs(diff(xlims))>1,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ E))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
degs = c(0)
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ ""))
axis(1, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
axis(3, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),mgp=c(1,.2,0))
}
if (all(c(sl,nl) < 0)) {
degs = seq(sl,nl,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ S))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
}
if (all(c(sl,nl) > 0)) {
degs = seq(sl,nl,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ N))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.2,0))
}
if (!all(c(sl,nl) >0)) {
degs = seq(sl,-5,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ S))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
degs = seq(5,nl,ifelse(largo>10,4,1))
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ N))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
degs = c(0)
alg = sapply(degs,function(x) bquote(.(abs(x))*degree ~ ""))
axis(2, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
axis(4, at=degs, lab=do.call(expression,alg),font.axis=2,cex.axis=axlab,tick=T,tck=c(-.01),las=2,mgp=c(1,.5,0))
}
if (NS){
for (lat in seq(55,66,by=.5)) {segments(x0=c(-4),y0=lat,x1=12,y1=lat,col=gray(.85),lwd=.01) }
for (lat in seq(49.5,55,by=.5)) {segments(x0=c(-2),y0=lat,x1=12,y1=lat,col=gray(.85),lwd=.01) }
for (long in seq(c(-4),12,by=1)) {segments(x0=long,y0=55,x1=long,y1=65,col=gray(.85),lwd=.01) }
for (long in seq(c(-2),12,by=1)) {segments(x0=long,y0=49.5,x1=long,y1=55,col=gray(.85),lwd=.01) }
}
if (ICESlab) text(c(stat_y+.22)~stat_x,Area,label=ICESNAME,cex=ICESlabcex,font=2)
if (ICESrect) {
abline(h=seq(30,65,by=.5),col=gray(.3),lwd=.2)
abline(v=seq(-44,68),col=gray(.3),lwd=.2)
}
rug(seq(c(sl+.5),c(nl+.5),by=1),.005,side=2,lwd=lwdl,quiet=TRUE)
rug(seq(c(xlims[1]+.5),c(xlims[2]+.5),by=1),.005,side=1,lwd=lwdl,quiet=TRUE)
rug(seq(c(xlims[1]+.5),c(xlims[2]+.5),by=1),.005,side=3,lwd=lwdl,quiet=TRUE)
rug(seq(c(sl+.5),c(nl+.5),by=1),.005,side=4,lwd=lwdl,quiet=TRUE)
if (load){
maps::map(SWC_Q1_w84,SWC_Q1_w84$Name,add=T,col=gray(.4),lwd=.1,fill=T,dens=0,angle=0)
maps::map(SWC_Q3_w84,SWC_Q3_w84$Name,add=T,col=gray(.4),lwd=.1,fill=T,dens=0,angle=45)
maps::map(NIGFS_w84,NIGFS_w84$NAME,add=T,col=gray(.4),lwd=.1,fill=T,dens=0,angle=90)
sp::plot(SWC_Q1_w84,add=T,col=gray(.4),lwd=.01,dens=dens,angle=0)
sp::plot(SWC_Q3_w84,add=T,col=2,lwd=.01,dens=dens,angle=45)
sp::plot(NIGFS_w84,add=T,col=3,lwd=.01,dens=dens,angle=45)
sp::plot(IGFS_w84,add=T,col=4,lwd=.01,dens=dens,angle=135)
sp::plot(Porc_w84,add=T,col=5,lwd=.01,dens=dens,angle=180)
sp::plot(CGFS,add=T,col=6,lwd=.1,dens=dens,angle=225)
sp::plot(EVHOE_w84,add=T,col=gray(.4),lwd=.1,dens=dens,angle=270)
sp::plot(Sp_North_w84,add=T,col=2,lwd=.1,dens=dens,angle=315)
sp::plot(PT_IBTS,add=T,col=3,lwd=.1,dens=dens,angle=0)
sp::plot(Sp_Cadiz_w84,add=T,col=4,lwd=.1,dens=dens,angle=45)
}
maps::map(database = "worldHires",xlim = xlims, ylim = c(sl,nl),fill=T,col=ifelse(bw,"gray","burlywood3"),add=T,fg="blue",interior = T,boundary = T,lty=1,lwd=.05)
#maps::map(database = "worldHires",xlim = xlims, ylim = c(sl,nl),fill=T,col=ifelse(bw,"gray",add=T,bg="blue",interior=bords)
box()
if (leg) legend("bottomleft",c("UK-SCOSWCGFS","UK-SCOROC","UK-NIGFS","IE-IGFS","SP-PORC","FR-CGFS",
"FR-EVHOE","SP-NORTH","PT-PGFS","SP-GCGFS"),fill=c(gray(.4),2:6),
cex=cex.leg,inset=c(.03,.2),title="Surveys",bg="white",text.col="black",
dens=dens,angle=seq(0,315,by=45))
if (out!="def") dev.off()
}
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