perfFishTestChemSingle: Enriched HPO terms for a single chemical's associated gene...

In GHLCLab/phexpo: Bidirectional enrichment analysis of phenotypes and chemicals

Description

Enriched HPO terms for a single chemical's associated gene list

Usage

perfFishTestChemSingle(cname, enrich_1S = TRUE)

Arguments

cname	Chemical character.
enrich_1S	Enrichment one-sided. Default set to true for enrichment, where the one-sided Fisher's exact is set to alternative = "greater." If enrich_1S = FALSE, Fisher's exact is set to alternative = "two.sided" for two-sided.

Value

Tibble data frame with enrichment.

Note

Chemical names and synonyms used are dependent on the chemical names within CTD.

Examples

perfFishTestChemSingle("Iodine")

GHLCLab/phexpo documentation built on Jan. 9, 2020, 12:10 a.m.