perfFishTestHPOSingle: Enriched chemicals for a single phenotype term's associated...

In GHLCLab/phexpo: Bidirectional enrichment analysis of phenotypes and chemicals

Description

Enriched chemicals for a single phenotype term's associated gene list

Usage

perfFishTestHPOSingle(HPO, enrich_1S = TRUE)

Arguments

HPO	Human Phenotype Ontology term character.
enrich_1S	Enrichment one-sided. Default set to true for enrichment, where the one-sided Fisher's exact is set to alternative = "greater." If enrich_1S = FALSE, Fisher's exact is set to alternative = "two.sided" for two-sided.

Value

Tibble data frame with enrichment.

Note

HPO terms used should be phenotypic abnormality terms within the HPO release 2019-02-12.

Examples

perfFishTestHPOSingle("Rickets")

GHLCLab/phexpo documentation built on Jan. 9, 2020, 12:10 a.m.