perfFishTestChemMultiple: Enriched HPO terms for multiple chemicals

In GHLCLab/phexpo: Bidirectional enrichment analysis of phenotypes and chemicals

Description

Enriched HPO terms for multiple chemicals

Usage

perfFishTestChemMultiple(cname, enrich_1S = TRUE)

Arguments

cname	List of chemical characters.
enrich_1S	Enrichment one-sided. Default set to true for enrichment, where the one-sided Fisher's exact is set to alternative = "greater." If enrich_1S = FALSE, Fisher's exact is set to alternative = "two.sided" for two-sided.

Value

Tibble data frame with enrichment.

Note

Enrichment for multiple chemicals is a simplistic exploratory function, where we take an additive approach. Chemical names and synonyms used are dependent on the chemical names within CTD.

Examples

perfFishTestChemMultiple(list("bisphenol A","bisphenol F","bisphenol B"))

GHLCLab/phexpo documentation built on Jan. 9, 2020, 12:10 a.m.