convertAlleleToVariable: Convert allele numbers to additional variables

In Genentech/midasHLA: R package for immunogenomics data handling and association analysis

Convert allele numbers to additional variables

Description

convertAlleleToVariable converts input HLA allele numbers to additional variables based on the supplied dictionary.

Usage

convertAlleleToVariable(allele, dictionary)

Arguments

allele	Character vector with HLA allele numbers.
dictionary	Path to file containing HLA allele dictionary or a data frame.

Details

dictionary file should be a tsv format with header and two columns. First column should hold allele numbers, second additional variables (eg. expression level).

Type of the returned vector depends on the type of the additional variable.

Value

Vector containing HLA allele numbers converted to additional variables according to dictionary.

Examples

dictionary <- system.file("extdata", "Match_allele_HLA_supertype.txt", package = "midasHLA")
convertAlleleToVariable(c("A*01:01", "A*02:01"), dictionary = dictionary)

Genentech/midasHLA documentation built on Feb. 12, 2024, 9:38 a.m.