distGrantham: Calculate Grantham distance between amino acid sequences
In Genentech/midasHLA: R package for immunogenomics data handling and association analysis
distGrantham R Documentation
Calculate Grantham distance between amino acid sequences
Description
distGrantham calculates normalized Grantham distance between two
amino acid sequences. For details on calculations see
Grantham R. 1974..
Usage
distGrantham(aa1, aa2)
Arguments
aa1
Character vector giving amino acid sequence using one letter
codings. Each element must correspond to single amino acid.
aa2
Character vector giving amino acid sequence using one letter
codings. Each element must correspond to single amino acid.
Details
Distance between amino acid sequences is normalized by length of compared
sequences.
Lengths of aa1 and aa2 must be equal.
Value
Numeric vector of normalized Grantham distance between aa1 and
aa2.
Genentech/midasHLA documentation built on Feb. 12, 2024, 9:38 a.m.
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| distGrantham | R Documentation |
Calculate Grantham distance between amino acid sequences
Description
distGrantham calculates normalized Grantham distance between two
amino acid sequences. For details on calculations see
Grantham R. 1974..
Usage
distGrantham(aa1, aa2)
Arguments
aa1 |
Character vector giving amino acid sequence using one letter codings. Each element must correspond to single amino acid. |
aa2 |
Character vector giving amino acid sequence using one letter codings. Each element must correspond to single amino acid. |
Details
Distance between amino acid sequences is normalized by length of compared sequences.
Lengths of aa1 and aa2 must be equal.
Value
Numeric vector of normalized Grantham distance between aa1 and
aa2.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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