getAAFrequencies: Calculate amino acid frequencies
In Genentech/midasHLA: R package for immunogenomics data handling and association analysis
View source: R/transformationFunctions.R
getAAFrequencies R Documentation
Calculate amino acid frequencies
Description
getAAFrequencies calculates amino acid frequencies in amino acid
data frame.
Usage
getAAFrequencies(aa_variation)
Arguments
aa_variation
Amino acid variation data frame as returned by
hlaToAAVariation.
Details
Both gene copies are taken into consideration for frequencies calculation,
frequency = n / (2 * j) where n is the number of amino acid
occurrences and j is the number of samples in aa_variation.
Value
Data frame with each row holding specific amino acid position, it's
count and frequency.
Examples
aa_variation <- hlaToAAVariation(MiDAS_tut_HLA)
getAAFrequencies(aa_variation)
Genentech/midasHLA documentation built on Feb. 12, 2024, 9:38 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/transformationFunctions.R
| getAAFrequencies | R Documentation |
Calculate amino acid frequencies
Description
getAAFrequencies calculates amino acid frequencies in amino acid
data frame.
Usage
getAAFrequencies(aa_variation)
Arguments
aa_variation |
Amino acid variation data frame as returned by hlaToAAVariation. |
Details
Both gene copies are taken into consideration for frequencies calculation,
frequency = n / (2 * j) where n is the number of amino acid
occurrences and j is the number of samples in aa_variation.
Value
Data frame with each row holding specific amino acid position, it's count and frequency.
Examples
aa_variation <- hlaToAAVariation(MiDAS_tut_HLA)
getAAFrequencies(aa_variation)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.