getOmnibusGroups: Get omnibus groups from MiDAS object.

In Genentech/midasHLA: R package for immunogenomics data handling and association analysis

Get omnibus groups from MiDAS object.

Description

Get omnibus groups from MiDAS object.

Usage

getOmnibusGroups(object, experiment)

Arguments

object	MiDAS object.
experiment	String specifying experiment.

Details

For some experiments features can be naturally divided into groups (here called omnibus groups). For example, in "hla_aa" experiment features can be grouped by amino acid position ("B_46_E", "B_46_A") can be grouped into B_46 group). Such groups can be then used to perform omnibus test, see runMiDAS for more details.

Value

List of omnibus groups for a given experiment.

Examples

getOmnibusGroups(object = MiDAS_tut_object,
                 experiment = "hla_aa")

Genentech/midasHLA documentation built on Feb. 12, 2024, 9:38 a.m.