sls_sim: Simulate an sls process

In Giappo/sls: Likelihood model for diversification processes with single lineage rate shifts

Description

Simulate an sls process

Usage

sls_sim(
  lambdas,
  mus,
  ks = c(Inf, Inf),
  cond = 3,
  l_2 = sls::sim_get_standard_l_2(),
  l_matrix_size = 10000
)

Arguments

lambdas	speciation rates, for all the clades
mus	extinction rate, for all the clades
ks	carrying capacities, for all the clades
cond	type of conditioning: cond = 0 no conditiong; cond = 1 conditions on the survival of crown descendents; cond = 2 conditions on the survival of subclade and on the other crown descendents in the main clade; cond = 3 conditions on the survival of the subclade and both crown descendents in the main clade;
l_2	the matrix containing the information about how the subclades are nested into the main clade. See sim_get_standard_l_2 for more info.
l_matrix_size	the initial length of the l matrix. It will be increased if necessary

Value

l_1 table and brts

Author(s)

Giovanni Laudanno

Giappo/sls documentation built on Feb. 1, 2021, 9:55 a.m.