API for GrahamHamilton/pipelineTools
Pipeline Tools for NGS Sequence Analysis Pipelines

Global functions
prepare_samples	Man page Source code
prepare_solo_samples	Man page Source code
run_bcftools	Man page Source code
run_bedtools	Man page Source code
run_blast	Man page Source code
run_bowtie	Man page Source code
run_bowtie2	Man page Source code
run_bwa	Man page Source code
run_centrifuge	Man page Source code
run_cutadapt	Man page Source code
run_cuteSV	Man page Source code
run_deeptools	Man page Source code
run_fastp	Man page Source code
run_fastq_screen	Man page Source code
run_fastqc	Man page Source code
run_flye	Man page Source code
run_freebayes	Man page Source code
run_gatk	Man page Source code
run_hisat2	Man page Source code
run_htseq_count	Man page Source code
run_kallisto	Man page Source code
run_macs	Man page Source code
run_mageck	Man page Source code
run_masurca	Man page Source code
run_minimap2	Man page Source code
run_multiqc	Man page Source code
run_nanofilt	Man page Source code
run_picard	Man page Source code
run_samtools	Man page Source code
run_seqtk	Man page Source code
run_sicer	Man page Source code
run_snpeff	Man page Source code
run_snpsift	Man page Source code
run_star	Man page Source code
run_stringtie	Man page Source code
run_umitools	Man page Source code
run_vcf_index	Man page Source code
run_vcftools	Man page Source code
save_pheatmap_png	Man page Source code

GrahamHamilton/pipelineTools documentation built on Dec. 8, 2024, 3:53 p.m.

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