Reads in the sample file names for the directory or directories, for scRNA samples. Requires paired end reads.
prepare_solo_samples(path = path, patt)
List of full paths to directory or directories containing the raw reads data
List of suffix patterns for the raw reads data for forward and reverse reads
Dataframe with sorted file paths and sample names
1 2 3 4 5 6 7 8 9 10 11 12 13
reads.path <- c("/Path to reads 1", "/Path to reads 2") # Standard suffixes for reads files for forward and reverse files reads.patt.1 <- "*_R1_001.fastq.gz$" reads.patt.2 <- "*_R2_001.fastq.gz$" sample.dataframe <- prepare_solo_samples(reads.path, c(reads.patt.1,reads.patt.2)) mate1 <- as.character(sample.dataframe$reads.path.1) mate2 <- as.character(sample.dataframe$reads.path.2) sample.names <- as.character(sample.dataframe$sample.names)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.