run_multiqc: Run MultiQC

Description Usage Arguments Examples

View source: R/run_multiqc.R

Description

Run MultiQC

Usage

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run_multiqc(workingDir = NULL, multiqc = NULL, version = FALSE)

Arguments

workingDir

Current working directory, parent directory for the logfiles, required

multiqc

Path to the MultiQC program, required

version

Returns the version number

Examples

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 ## Not run: 
 workingDir <- getwd()
 run_multiqc(workingDir,
             multiqc = "/usr/local/bin/multiqc")
 
## End(Not run)

GrahamHamilton/pipelineTools documentation built on June 19, 2021, 1:08 p.m.