run_multiqc: Run MultiQC

In GrahamHamilton/pipelineTools: Pipeline Tools for NGS Sequence Analysis Pipelines

Run MultiQC

Description

Run MultiQC

Usage

run_multiqc(workingDir = NULL, multiqc = NULL, version = FALSE)

Arguments

workingDir	Current working directory, parent directory for the logfiles, required
multiqc	Path to the MultiQC program, required
version	Returns the version number

Examples

 ## Not run: 
 workingDir <- getwd()
 run_multiqc(workingDir,
             multiqc = "/usr/local/bin/multiqc")
 
## End(Not run)

GrahamHamilton/pipelineTools documentation built on Dec. 8, 2024, 3:53 p.m.