API for GrahamHamilton/pipelineTools
Pipeline Tools for NGS Sequence Analysis Pipelines

Global functions
prepare_samples Man page Source code
prepare_solo_samples Man page Source code
run_bcftools Man page Source code
run_bedtools Man page Source code
run_blast Man page Source code
run_bowtie Man page Source code
run_bowtie2 Man page Source code
run_bwa Man page Source code
run_centrifuge Man page Source code
run_cutadapt Man page Source code
run_cuteSV Man page Source code
run_deeptools Man page Source code
run_fastp Man page Source code
run_fastq_screen Man page Source code
run_fastqc Man page Source code
run_flye Man page Source code
run_freebayes Man page Source code
run_gatk Man page Source code
run_hisat2 Man page Source code
run_htseq_count Man page Source code
run_kallisto Man page Source code
run_macs Man page Source code
run_mageck Man page Source code
run_minimap2 Man page Source code
run_multiqc Man page Source code
run_nanofilt Man page Source code
run_picard Man page Source code
run_samtools Man page Source code
run_sicer Man page Source code
run_snpeff Man page Source code
run_snpsift Man page Source code
run_star Man page Source code
run_stringtie Man page Source code
run_umitools Man page Source code
run_vcf_index Man page Source code
run_vcftools Man page Source code
save_pheatmap_png Man page Source code
GrahamHamilton/pipelineTools documentation built on Feb. 19, 2024, 1:03 a.m.