Man pages for GrahamHamilton/pipelineTools
Pipeline Tools for NGS Sequence Analysis Pipelines

prepare_samplesPrepare samples
run_bedtoolsRun the Bedtools program
run_bowtieRun bowtie
run_bowtie2Run the Bowtie2
run_bwaRun the BWA aligner
run_cutadaptRun Cutadapt
run_deeptoolsRun Deeptools
run_fastpRun FastP
run_fastqcRun FastQC
run_fastq_screenRun Fastq-Screen
run_hisat2Run HISAT2
run_htseq_countRun HtSeq-Count
run_kallistoRun Kallisto
run_multiqcRun MultiQC
run_picardRun Picard
run_samtoolsRun Samtools
run_sicerRun Sicer2
run_starRun the STAR/STARsolo program
run_stringtieRun Stringtie
GrahamHamilton/pipelineTools documentation built on March 26, 2021, 5:40 p.m.