Man pages for GrahamHamilton/pipelineTools
Pipeline Tools for NGS Sequence Analysis Pipelines

prepare_samplesPrepare samples
run_bedtoolsRun the Bedtools program
run_bowtieRun bowtie
run_bowtie2Run the Bowtie2
run_bwaRun the BWA aligner
run_cutadaptRun Cutadapt
run_fastpRun FastP
run_fastqcRun FastQC
run_fastq_screenRun Fastq-Screen
run_hisat2Run HISAT2
run_kallistoRun Kallisto
run_multiqcRun MultiQC
run_picardRun Picard
run_samtoolsRun Samtools
run_stringtieRun Stringtie
GrahamHamilton/pipelineTools documentation built on Dec. 3, 2019, 4:21 p.m.