Files in GrahamHamilton/pipelineTools
Pipeline Tools for NGS Sequence Analysis Pipelines
.DS_Store
.Rbuildignore
._.DS_Store
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/._.DS_Store
R/prepare_samples.R
R/prepare_solo_samples.R
R/run_bcftools.R
R/run_bedtools.R
R/run_blast.R
R/run_bowtie.R
R/run_bowtie2.R
R/run_bwa.R
R/run_centrifuge.R
R/run_cutadapt.R
R/run_cuteSV.R
R/run_deeptools.R
R/run_fastp.R
R/run_fastq_screen.R
R/run_fastqc.R
R/run_flye.R
R/run_freebayes.R
R/run_gatk.R
R/run_hisat2.R
R/run_htseq_count.R
R/run_kallisto.R
R/run_mageck.R
R/run_minimap2.R
R/run_multiqc.R
R/run_nanofilt.R
R/run_picard.R
R/run_samtools.R
R/run_sicer.R
R/run_snpeff.R
R/run_snpsift.R
R/run_star.R
R/run_stringtie.R
R/run_umitools.R
R/run_vcf_index.R
R/run_vcftools.R
R/save_pheatmap.R
README.md
man/prepare_samples.Rd
man/prepare_solo_samples.Rd
man/run_bcftools.Rd
man/run_bedtools.Rd
man/run_blast.Rd
man/run_bowtie.Rd
man/run_bowtie2.Rd
man/run_bwa.Rd
man/run_centrifuge.Rd
man/run_cutadapt.Rd
man/run_cuteSV.Rd
man/run_deeptools.Rd
man/run_fastp.Rd
man/run_fastq_screen.Rd
man/run_fastqc.Rd
man/run_flye.Rd
man/run_freebayes.Rd
man/run_gatk.Rd
man/run_hisat2.Rd
man/run_htseq_count.Rd
man/run_kallisto.Rd
man/run_mageck.Rd
man/run_minimap2.Rd
man/run_multiqc.Rd
man/run_nanofilt.Rd
man/run_picard.Rd
man/run_samtools.Rd
man/run_sicer.Rd
man/run_snpeff.Rd
man/run_snpsift.Rd
man/run_star.Rd
man/run_stringtie.Rd
man/run_umitools.Rd
man/run_vcf_index.Rd
man/run_vcftools.Rd
man/save_pheatmap_png.Rd
pipelineTools.Rproj
vignettes/.gitignore
vignettes/PipelineTools.Rmd
