createReport_exploratory,DsATAC-method | R Documentation |
Create a report summarizing exploratory analyses of an accessibility dataset
## S4 method for signature 'DsATAC'
createReport_exploratory(
.object,
reportDir,
chromVarObj = NULL,
itLsiObj = NULL,
geneActSe = NULL
)
.object |
|
reportDir |
directory in which the report will be created |
chromVarObj |
[optional] pre-computed result of a call to |
itLsiObj |
[for single-cell only; optional] pre-computed result of a call to |
geneActSe |
[for single-cell only; optional] pre-computed result of a call to |
(invisible) muReportR::Report
object containing the report
Fabian Mueller
## Not run:
dsa <- ChrAccRex::loadExample("dsAtac_ia_example")
dsa_qnorm <- transformCounts(dsa, method="quantile")
setConfigElement("annotationColumns", c("cellType", "donor", "stimulus"))
setConfigElement("regionTypes", setdiff(getRegionTypes(dsa), c("promoters_gc_protein_coding", "t10k")))
reportDir <- file.path(".", "ChrAccR_reports")
createReport_exploratory(dsa_qnorm, reportDir)
## End(Not run)
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