getATACfragments: getATACfragments
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
getATACfragments R Documentation
getATACfragments
Description
Given a GAlignmentPairs or GAlignments object, return a GRanges object containing the fragment (or insertion site for single-end data)
Usage
getATACfragments(ga, offsetTn = TRUE)
Arguments
ga
GAlignmentPairs (or GAlignments for single-end sequencing) object
offsetTn
apply offsets for Tn5 dimer cut site (+4 bp on genomic + strand; -4 bp on genomic - strand)
Value
GRanges object containing derived insertions. For paired-end data (recommended), the width of the resulting ranges corresponds to the insert size
for single-end data, the width is set to 1bp
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
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| getATACfragments | R Documentation |
getATACfragments
Description
Given a GAlignmentPairs or GAlignments object, return a GRanges object containing the fragment (or insertion site for single-end data)
Usage
getATACfragments(ga, offsetTn = TRUE)
Arguments
ga |
|
offsetTn |
apply offsets for Tn5 dimer cut site (+4 bp on genomic + strand; -4 bp on genomic - strand) |
Value
GRanges object containing derived insertions. For paired-end data (recommended), the width of the resulting ranges corresponds to the insert size
for single-end data, the width is set to 1bp
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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