exportCountTracks-DsATAC-method: exportCountTracks-methods

In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R

exportCountTracks-methods

Description

export count data as genome tracks (e.g. for visualization in the browser)

Usage

## S4 method for signature 'DsATAC'
exportCountTracks(
  .object,
  type,
  outDir,
  formats = c("bed", "igv"),
  groupBy = NULL
)

Arguments

.object	DsATAC object
type	character string specifying the region type
outDir	output directory. Must be existing.
formats	browser format. Currently only bed and "igv" are supported
groupBy	a column in the sample annotation table to group by (the mean will be computed)

Value

nothing of particular interest

Author(s)

Fabian Mueller

GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.