getCountsSE-DsATAC-method: getCountsSE-methods
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
getCountsSE,DsATAC-method R Documentation
getCountsSE-methods
Description
Return a SummarizedExperiment object of count values
Usage
## S4 method for signature 'DsATAC'
getCountsSE(.object, type, naIsZero = TRUE)
Arguments
.object
DsATAC object
type
character string specifying the region type
naIsZero
should NAs in the count matrix be considered 0 value (instead of unknown/missing)
Value
SummarizedExperiment containing counts for each region and sample
Author(s)
Fabian Mueller
Examples
## Not run:
dsa <- ChrAccRex::loadExample("dsAtac_ia_example")
se <- getCountsSE(dsa, "IA_prog_peaks")
se
## End(Not run)
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
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| getCountsSE,DsATAC-method | R Documentation |
getCountsSE-methods
Description
Return a SummarizedExperiment object of count values
Usage
## S4 method for signature 'DsATAC'
getCountsSE(.object, type, naIsZero = TRUE)
Arguments
.object |
|
type |
character string specifying the region type |
naIsZero |
should |
Value
SummarizedExperiment containing counts for each region and sample
Author(s)
Fabian Mueller
Examples
## Not run:
dsa <- ChrAccRex::loadExample("dsAtac_ia_example")
se <- getCountsSE(dsa, "IA_prog_peaks")
se
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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