getChromVarDev-DsATAC-method: getChromVarDev-methods

getChromVarDev,DsATAC-methodR Documentation

getChromVarDev-methods

Description

Compute chromVar deviations

Usage

## S4 method for signature 'DsATAC'
getChromVarDev(.object, type, motifs = "jaspar")

Arguments

.object

DsATAC object

type

character string specifying the region type

motifs

either a character string (currently only "jaspar" and sets contained in chromVARmotifs ("homer", "encode", "cisbp") are supported) or an object containing PWMs that can be used by motifmatchr::matchMotifs (such as an PFMatrixList or PWMatrixList object)

Value

Deviations object as returned by chromVAR::computeDeviations

Author(s)

Fabian Mueller


GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.