Seurat2_velocyto: Run Velocyto analysis on your Seurat2 object

In GrigoriiNos/rimmi.rnaseq: Set of functions for genomics data analysis

Run Velocyto analysis on your Seurat2 object

Description

This function allows you to plot velocyto on your 2d embeddings

Usage

Seurat2_velocyto(rvel.cd, Seurat_obj, emb)

Arguments

rvel.cd	the output of preprocess_loom() function
Seurat_obj	Seurat object
emb	a matrix with 2d embeddings, the oitput of get_emb() function

Value

umap 2d plot with velocity

Examples

emb <- get_emb(B06, emb = 'umap')

rvel.cd <- preprocess_loom('~/Desktop/RIMMI/Adam_germinal_cenrte/B06/velocyto/B06.loom', B06, emb)

Seurat2_velocyto(rvel.cd, B06, emb)

GrigoriiNos/rimmi.rnaseq documentation built on April 29, 2022, 5:18 p.m.