pseudo.bulk.DEG: apply DESeq for DEG pseudo bulk collapsed samples
In GrigoriiNos/rimmi.rnaseq: Set of functions for genomics data analysis
pseudo.bulk.DEG R Documentation
apply DESeq for DEG pseudo bulk collapsed samples
Description
This function allows you to calculate an average expression for the list of genes of your interest.
Usage
pseudo.bulk.DEG(
Seurat_sub.obj,
sample = "orig.ident",
condition = "condition",
fitType = "local",
show.genes = c("CCL19", "CCL21A")
)
Arguments
show.genes
additional genes to display
Seurat_obj
your Seurat object
thresh.pv
display genes with at least this p value
Value
DEG table
GrigoriiNos/rimmi.rnaseq documentation built on April 29, 2022, 5:18 p.m.
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| pseudo.bulk.DEG | R Documentation |
apply DESeq for DEG pseudo bulk collapsed samples
Description
This function allows you to calculate an average expression for the list of genes of your interest.
Usage
pseudo.bulk.DEG(
Seurat_sub.obj,
sample = "orig.ident",
condition = "condition",
fitType = "local",
show.genes = c("CCL19", "CCL21A")
)
Arguments
show.genes |
additional genes to display |
Seurat_obj |
your Seurat object |
thresh.pv |
display genes with at least this p value |
Value
DEG table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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