add_hash: Merge cell hashcoding demultiplexed data with GEX Seurat 3...
In GrigoriiNos/rimmi.rnaseq: Set of functions for genomics data analysis
add_hash R Documentation
Merge cell hashcoding demultiplexed data with GEX Seurat 3 object with VDJ metadata
Description
This function allows you to fuse the output of hashcode demultiplexing with GEX+VDJ object
Usage
add_hash(
hash.matrix,
Seurat_obj,
sample_name,
quantile_theshold = 0.99,
method = c("HTODemux", "MULTIhash")
)
Arguments
hash.matrix
a cellular bacrode vs hashtags matrix
Seurat_obj
Seurat object
Value
Seurat 3 object merged with hashtag demiltiplexed identities in the metadata slot
Examples
A07 <- add_hash(Seurat_objhash, Seurat_obj, 'A14')
GrigoriiNos/rimmi.rnaseq documentation built on April 29, 2022, 5:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| add_hash | R Documentation |
Merge cell hashcoding demultiplexed data with GEX Seurat 3 object with VDJ metadata
Description
This function allows you to fuse the output of hashcode demultiplexing with GEX+VDJ object
Usage
add_hash(
hash.matrix,
Seurat_obj,
sample_name,
quantile_theshold = 0.99,
method = c("HTODemux", "MULTIhash")
)
Arguments
hash.matrix |
a cellular bacrode vs hashtags matrix |
Seurat_obj |
Seurat object |
Value
Seurat 3 object merged with hashtag demiltiplexed identities in the metadata slot
Examples
A07 <- add_hash(Seurat_objhash, Seurat_obj, 'A14')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.