get_emb: Run Velocyto analysis on your Seurat2 object
In GrigoriiNos/rimmi.rnaseq: Set of functions for genomics data analysis
View source: R/Seurat_velocyto.R
get_emb R Documentation
Run Velocyto analysis on your Seurat2 object
Description
This function allows you to get 2d embeddings from your Seurat object that you want to use for velocyto analysis
Usage
get_emb(Seurat_obj, emb = c("umap", "monocle", "custom"))
Arguments
Seurat_obj
Seurat object
emb
embedding type of your choice
Value
umap 2d plot with velocity
Examples
emb <- get_emb(B06, emb = 'umap')
rvel.cd <- preprocess_loom('~/Desktop/RIMMI/Adam_germinal_cenrte/B06/velocyto/B06.loom', B06, emb)
Seurat2_velocyto(rvel.cd, B06, emb)
GrigoriiNos/rimmi.rnaseq documentation built on April 29, 2022, 5:18 p.m.
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View source: R/Seurat_velocyto.R
| get_emb | R Documentation |
Run Velocyto analysis on your Seurat2 object
Description
This function allows you to get 2d embeddings from your Seurat object that you want to use for velocyto analysis
Usage
get_emb(Seurat_obj, emb = c("umap", "monocle", "custom"))
Arguments
Seurat_obj |
Seurat object |
emb |
embedding type of your choice |
Value
umap 2d plot with velocity
Examples
emb <- get_emb(B06, emb = 'umap')
rvel.cd <- preprocess_loom('~/Desktop/RIMMI/Adam_germinal_cenrte/B06/velocyto/B06.loom', B06, emb)
Seurat2_velocyto(rvel.cd, B06, emb)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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