dot_plot_topXgenes: Make a dot plot for all your markers

In GrigoriiNos/rimmi.rnaseq: Set of functions for genomics data analysis

Make a dot plot for all your markers

Description

This function allows you to plot each top X DEG for each cell cluster using a Seurat::FindAllMarkers function output

Usage

dot_plot_topXgenes(markers_table, X = 5, Seurat_obj)

Arguments

markers_table	The output of the Seurat::FndAllMarkers function, don't change anything in the column names within it.
X	How much of the genes you need to analyse in each cluster. 5 is a default.
Seurat_obj	your Seurat object to plot markers from

Examples

dot_plot_topXgenes(markers, 10)

GrigoriiNos/rimmi.rnaseq documentation built on April 29, 2022, 5:18 p.m.