In HIVDiversity/MotifBinner2: Processes NGS Primer ID Datasets

opts_chunk$set(echo=FALSE)
opts_chunk$set(warning=FALSE)
opts_chunk$set(fig.pos = 'H')

library(MotifBinner2)

if (!exists('result'))
{
  result <- all_results[[grep('binSizeCheck', names(all_results))[1]]]
}
if (class(result) != 'binSizeCheck')
{
  result <- all_results[[grep('binSizeCheck', names(all_results))[1]]]
}

r result$config$op_full_name

Check that the bins still satisfy the minimum bin size restrictions. Merging and trimming after the bad PIDs were processed might result in bins that are too small to align and pull a consensus from. This operation removes them.

kable_summary(result$summary)

timingTable(result)

cat('\n\n---\n\n')

HIVDiversity/MotifBinner2 documentation built on May 6, 2019, 6:44 p.m.