sim_wrapper: Wrapper that performs simulation and process the results

Description Usage Arguments

View source: R/consensus_cutoff.R

Description

The function calls the sim_all_parents_main_off function and saves the result to a folder together with a file that contains a description of the simulation parameters.

Usage

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sim_wrapper(output_dir, file_name, size_start = 100, size_stop = 10000,
  size_step = 100, pl = 9, phi = (1/50), repeats = 1000,
  verbose = FALSE, ncpu = 8)

Arguments

output_dir

The output directory where the simulation result must be placed

file_name

The name of the output file in which the results will be stored. Must end in .csv.

size_start

The smallest bin size to simulate

size_stop

The largest bin size to simulate

size_step

The size of the steps to take to reach the largest bin size

pl

PID length (9)

phi

Sequencing read error rate (1/50)

repeats

The number of repeats to run for each bin size

ncpu

Number of cores to use for simulation

vebose

If TRUE print loop progress


HIVDiversity/MotifBinner2 documentation built on May 6, 2019, 6:44 p.m.