View source: R/consensus_cutoff.R
The function calls the sim_all_parents_main_off function and saves the result to a folder together with a file that contains a description of the simulation parameters.
1 2 3 | sim_wrapper(output_dir, file_name, size_start = 100, size_stop = 10000,
size_step = 100, pl = 9, phi = (1/50), repeats = 1000,
verbose = FALSE, ncpu = 8)
|
output_dir |
The output directory where the simulation result must be placed |
file_name |
The name of the output file in which the results will be stored. Must end in .csv. |
size_start |
The smallest bin size to simulate |
size_stop |
The largest bin size to simulate |
size_step |
The size of the steps to take to reach the largest bin size |
pl |
PID length (9) |
phi |
Sequencing read error rate (1/50) |
repeats |
The number of repeats to run for each bin size |
ncpu |
Number of cores to use for simulation |
vebose |
If TRUE print loop progress |
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