LR_cal: LR_cal

In IOBR/IOBR: Immune Oncology Biological Research

LR_cal

Description

Quantifies ligand-receptor interactions in the tumor microenvironment from bulk gene expression

Usage

LR_cal(eset, data_type = c("count", "tpm"), id_type = "ensembl")

Arguments

eset	ExpressionSet object containing gene expression data.
data_type	Type of input data, possible values are "count" or "tpm".
id_type	Type of gene identifier, default is "ensembl".

Examples

data("eset_stad", package = "IOBR")
lr <- LR_cal(eset = eset_stad, data_type = "count", id_type = "ensembl")

IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.