format_msigdb: Format input signatures from MsgiDB

In IOBR/IOBR: Immune Oncology Biological Research

Format input signatures from MsgiDB

Description

Format input signatures from MsgiDB

Usage

format_msigdb(gmt, ont = "term", gene = "gene")

Arguments

gmt	'signature' data frame downloaded from 'https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp#H'
ont	column name of signatures
gene	column name of gene

Value

signature list

Examples

# download gmt through: https://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/2023.2.Hs/h.all.v2023.2.Hs.symbols.gmt
format_msigdb("E:/0-0-0-My Pipeline/00-Signature-collection/h.all.v2023.2.Hs.symbols.gmt", ont = "term")

IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.