View source: R/format_msigdb.R
format_msigdb | R Documentation |
Format input signatures from MsgiDB
format_msigdb(gmt, ont = "term", gene = "gene")
gmt |
'signature' data frame downloaded from 'https://www.gsea-msigdb.org/gsea/msigdb/collections.jsp#H' |
ont |
column name of signatures |
gene |
column name of gene |
signature list
# download gmt through: https://www.gsea-msigdb.org/gsea/msigdb/download_file.jsp?filePath=/msigdb/release/2023.2.Hs/h.all.v2023.2.Hs.symbols.gmt
format_msigdb("E:/0-0-0-My Pipeline/00-Signature-collection/h.all.v2023.2.Hs.symbols.gmt", ont = "term")
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