format_signatures: Transform signature gene data into list format

In IOBR/IOBR: Immune Oncology Biological Research

Transform signature gene data into list format

Description

Transform signature gene data into list format

Usage

format_signatures(sig_data, save_signature = FALSE, output_name = "signatures")

Arguments

sig_data	signature data with signature name as column name and genes in row, using 'NA' to substitude the missing value
save_signature	logical, save siganture list as RData
output_name	string of name to save signature RData

Value

list of signatures

Author(s)

Dongqiang Zeng

Examples

# load signature data frame
data("sig_excel", package = "IOBR")
# transform into gene list for IOBR functions
format_signatures(sig_excel)
reading each column and transfer it to a list
standerdized the name of list

IOBR/IOBR documentation built on April 4, 2024, 1:07 a.m.