generateRef_limma: Generate Reference signature matrix using limma
In IOBR/IOBR: Immune Oncology Biological Research
View source: R/generateRef_limma.R
generateRef_limma R Documentation
Generate Reference signature matrix using limma
Description
Generate Reference signature matrix using limma
Usage
generateRef_limma(dat, pheno, FDR = 0.05)
Arguments
dat
data frame or matrix; gene probes in the row and samples in the column
pheno
character vector; cell type class of the samples
FDR
numeric; genes with BH adjust p value < FDR are considered significant.
IOBR/IOBR documentation built on April 4, 2024, 1:07 a.m.
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View source: R/generateRef_limma.R
| generateRef_limma | R Documentation |
Generate Reference signature matrix using limma
Description
Generate Reference signature matrix using limma
Usage
generateRef_limma(dat, pheno, FDR = 0.05)
Arguments
dat |
data frame or matrix; gene probes in the row and samples in the column |
pheno |
character vector; cell type class of the samples |
FDR |
numeric; genes with BH adjust p value < FDR are considered significant. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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