log2eset: Judge whether the expression set needs log2 transformation
In IOBR/IOBR: Immune Oncology Biological Research
log2eset R Documentation
Judge whether the expression set needs log2 transformation
Description
Judge whether the expression set needs log2 transformation
Usage
log2eset(eset = NULL)
Arguments
eset
gene expression set with row as genes and sample in the column
Value
gene expression set
Examples
# Loading TCGA-STAD expresion data(raw count matrix)
data("eset_stad", package = "IOBR")
# transform count data to tpm
eset <- count2tpm(eset_stad, idType = "ensembl")
eset <- log2eset(eset)
IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.
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| log2eset | R Documentation |
Judge whether the expression set needs log2 transformation
Description
Judge whether the expression set needs log2 transformation
Usage
log2eset(eset = NULL)
Arguments
eset |
gene expression set with row as genes and sample in the column |
Value
gene expression set
Examples
# Loading TCGA-STAD expresion data(raw count matrix)
data("eset_stad", package = "IOBR")
# transform count data to tpm
eset <- count2tpm(eset_stad, idType = "ensembl")
eset <- log2eset(eset)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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