rawEnrichmentAnalysis: Calculated raw xCell enrichment scores
In IOBR/IOBR: Immune Oncology Biological Research
rawEnrichmentAnalysis R Documentation
Calculated raw xCell enrichment scores
Description
rawEnrichmentAnalysis Returns the raw xCell cell types enrichment scores.
Usage
rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL)
Arguments
expr
the gene expression data set. A matrix with row names as symbols and columns as samples.
signatures
a GMT object of signatures.
genes
list of genes to use in the analysis.
file.name
string for the file name for saving the scores. Default is NULL.
Value
the raw xCell scores
IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.
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| rawEnrichmentAnalysis | R Documentation |
Calculated raw xCell enrichment scores
Description
rawEnrichmentAnalysis Returns the raw xCell cell types enrichment scores.
Usage
rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL)
Arguments
expr |
the gene expression data set. A matrix with row names as symbols and columns as samples. |
signatures |
a GMT object of signatures. |
genes |
list of genes to use in the analysis. |
file.name |
string for the file name for saving the scores. Default is NULL. |
Value
the raw xCell scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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