select_method: Choose which method to conduct following analysis

In IOBR/IOBR: Immune Oncology Biological Research

Choose which method to conduct following analysis

Description

Choose which method to conduct following analysis

Usage

select_method(data, method = "ssGSEA")

Arguments

data	signature matrix
method	choose method to analysis, contain three methodologies : PCA, ssGSEA, zScore

Value

filtered signature score matrix

Examples

data(eset_stad, package = "IOBR")
eset <- count2tpm(eset_stad, idType = "ensembl")
head(eset)
eset <- scale_matrix(eset, manipulate = TRUE)

res  <- calculate_sig_score(eset = eset, signature = signature_collection[1:4], method = "integration")
head(res)
res <- select_method(res, method = "PCA")
head(res)

IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.