sigScore: Calculate siganture score using PCA function

In IOBR/IOBR: Immune Oncology Biological Research

Calculate siganture score using PCA function

Description

Calculate siganture score using PCA function

Usage

sigScore(eset, methods = "PCA")

Arguments

eset	normalized count matrix; rows are all genes in the signature that shall be summarized into one score; columns are samples
methods	character vector defining whether signature scores shall be based on principal component 1 ("PC", default) or z-scores (other value)

Value

numeric vector of length ncol(eset); a score summarizing the rows of eset

Author(s)

Dorothee Nickles, Dongqiang Zeng

IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.