spillOver: Adjust scores using the spillover compensation method
In IOBR/IOBR: Immune Oncology Biological Research
spillOver R Documentation
Adjust scores using the spillover compensation method
Description
spillOver Returns the adjusted xCell scores.
Usage
spillOver(transformedScores, K, alpha = 0.5, file.name = NULL)
Arguments
transformedScores
the trasnformed scores of cell types calculated by transformScores
K
the Spillover matrix (spill$K).
alpha
a value to override the spillover alpha parameter. Deafult = 0.5
file.name
string for the file name for saving the scores. Default is NULL.
Value
the adjusted xCell scores
IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| spillOver | R Documentation |
Adjust scores using the spillover compensation method
Description
spillOver Returns the adjusted xCell scores.
Usage
spillOver(transformedScores, K, alpha = 0.5, file.name = NULL)
Arguments
transformedScores |
the trasnformed scores of cell types calculated by transformScores |
K |
the Spillover matrix (spill$K). |
alpha |
a value to override the spillover alpha parameter. Deafult = 0.5 |
file.name |
string for the file name for saving the scores. Default is NULL. |
Value
the adjusted xCell scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.