surv_group: Drawing KM-plot to a Categorical variable with two or more...

In IOBR/IOBR: Immune Oncology Biological Research

Drawing KM-plot to a Categorical variable with two or more groups

Description

Drawing KM-plot to a Categorical variable with two or more groups

Usage

surv_group(
  input_pdata,
  target_group,
  ID = "ID",
  levels = c("High", "Low"),
  reference_group = "High",
  project = NULL,
  time = "time",
  status = "status",
  time_type = "month",
  break_month = "auto",
  cols = NULL,
  palette = "jama",
  mini_sig = "score",
  save_path = paste0("KMplot"),
  fig.type = "pdf",
  index = 1,
  width = 6,
  height = 6.5,
  font.size.table = 3
)

Arguments

input_pdata	DATA
target_group	target of binary variable
ID	identifier of data
levels	level of variable
reference_group	default is
project	name of main title
time	column name of follow up time
status	status
time_type	month or day
break_month	break of time
cols	if null, palette should be set
palette	default is 'jama', if cols is null
mini_sig	prefix of variable
save_path	default is KMplot
fig.type	default is pdf, other option is png
index	folder name
width	default is 6
height	default is 6.5
font.size.table	default is 62

Author(s)

Dongqiang Zeng

Examples

data("tcga_stad_pdata", package = "IOBR")
surv_group(input_pdata = tcga_stad_pdata, target_group = "TMEscore_plus_binary", time = "time", status = "OS_status")

IOBR/IOBR documentation built on May 5, 2024, 2:34 p.m.