get_geneCount: Number of Times Gene Involved in Complete Network and...
In IceQueen1996/spongeAPI: User Friendly Application Of The SPONGE API

Description Usage Arguments Value Examples

Number of Times Gene Involved in Complete Network and Significant Interactions.

get_geneCount(
  disease_name = NULL,
  ensg_number = NULL,
  gene_symbol = NULL,
  minCountAll = NULL,
  minCountSign = NULL
)

`disease_name`	The name of the dataset of interest as string. If default is set, all available datasets with corresponding informations are shown. Fuzzy search is available.
`ensg_number`	A vector of ensg number(s). If ensg_number is set, gene_symbol must be NULL.
`gene_symbol`	A vector of gene symbol(s). If gene_symbol is set, ensg_number must be NULL.
`minCountAll`	Defines the minimal number of times a gene has to be involved in the complete network (e.g. the degree of the corresponding node must be greater than minCountAll).
`minCountSign`	Defines the minimal number of times a gene has to be involved in significant (p.adj < 0.05) interactions in the network.

A data_frame cotaining the amount of times a gene is involved in the complete network (equals to degree), column count_all, and in significant (FDR adjusted pValue < 0.05) interactions of the network, column count_sign.

1 2	# Get all genes from specific cancer with a minimum number of 150 at significant ceRNA interactions get_geneCount(disease_name = "kidney clear cell carcinoma", minCountSign = 150)