get_sponged_miRNA: Find Sponged miRNAs

Description Usage Arguments Value Examples

View source: R/find_miRNA.R

Description

Get all miRNAs that contribute to all interactions between the given identifiers (ensg_number or gene_symbol).

Usage

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get_sponged_miRNA(
  disease_name,
  ensg_number = NULL,
  gene_symbol = NULL,
  between = FALSE
)

Arguments

disease_name

Name of the specific cancer type/dataset. If default is set, all available datasets with corresponding informations are shown. Fuzzy search available.

ensg_number

A vector of ensg number(s). If ensg number is set, gene symbol and gene type must be NULL. One of the three identifiers must be provided.

gene_symbol

A vector of gene symbol(s). If gene symbol is set, ensg number and gene type must be NULL. One of the three identifiers must be provided.

between

If false (default), all interactions where one of the interaction partners fits the given genes of interest will be considered. If true, just interactions between the genes of interest will be considered.

Value

A data_frame containing all found miRNAs.

Examples

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get_sponged_miRNA(disease_name="kidney", gene_symbol = c("TCF7L1", "SEMA4B"), between=TRUE)

IceQueen1996/spongeAPI documentation built on March 8, 2021, 8:33 p.m.