get_survAna_pValues: Survival Analysis Log Rank pValues

In IceQueen1996/spongeAPI: User Friendly Application Of The SPONGE API

Description

Retrieve pValues from log rank test based on raw survival analysis data

Usage

get_survAna_pValues(disease_name, ensg_number = NULL, gene_symbol = NULL)

Arguments

disease_name	The name of the dataset of interest as string. If default is set, all available datasets with corresponding informations are shown. Fuzzy search is available.
ensg_number	A vector of ensg number(s). If ensg_number is set, gene_symbol must be NULL.
gene_symbol	A vector of gene symbol(s). If gene_symbol is set, ensg_number must be NULL.

Value

A data_frame with gene information and corresponding log rank test pValue. For raw data use function get_survAna_rates

Examples

 # Retrieve gene expression values for specif genes by ensg_numbers
get_survAna_pValues(disease_name = "kidney clear cell carcinoma",
                    ensg_number = c("ENSG00000259090","ENSG00000217289"))

# Retrieve gene expression values for specif genes by gene_symbols
get_survAna_pValues(disease_name = "kidney clear cell carcinoma",
                    gene_symbol = c("SEPT7P1","TIGAR"))

 ## Not run: 
# Ensg_numbers and gene_symbols together.
get_survAna_pValues(disease_name = "kidney clear cell carcinoma",
                    ensg_number = c("ENSG00000259090","ENSG00000217289"),
                    gene_symbol = c("SEPT7P1","TIGAR"))

## End(Not run)

IceQueen1996/spongeAPI documentation built on March 8, 2021, 8:33 p.m.