get_specific_ceRNAInteractions: Find All Possible ceRNA Interactions Between Identifiers

In IceQueen1996/spongeAPI: User Friendly Application Of The SPONGE API

Description

Get all interactions between the given identifiers (ensg_number or gene_symbol).

Usage

get_specific_ceRNAInteractions(
  disease_name = NULL,
  ensg_number = NULL,
  gene_symbol = NULL,
  pValue = 0.05,
  pValueDirection = "<",
  limit = 100,
  offset = NULL
)

Arguments

disease_name	Name of the specific cancer type/dataset. If default is set, all available datasets with corresponding informations are shown. Fuzzy search available.
ensg_number	A vector of ensg number(s). If ensg number is set, gene symbol and gene type must be NULL. One of the three identifiers must be provided.
gene_symbol	A vector of gene symbol(s). If gene symbol is set, ensg number and gene type must be NULL. One of the three identifiers must be provided.
pValue	Threshold of the FDR adjusted p-value. Default is 0.05.
pValueDirection	Direction of the FDR adjusted p-value threshold (<, >). Must be set if pValue is set. Possible values are: "<", ">".
limit	Number of results that should be shown. Default value is 100 and can be up to 1000. For more results please use batches, the provided offset parameter or download the whole dataset.
offset	Starting point from where results should be shown.

Value

A data_frame containing all interactions between genes of interest.

Examples

get_specific_ceRNAInteractions(disease_name = "pancancer",
             gene_symbol = c("PTENP1","VCAN","FN1"))
## Not run: 
# Do not use both identifiers at the same time
get_specific_ceRNAInteractions(disease_name = "pancancer",
                               ensg_number = c("ENSG00000115414","ENSG00000038427"),
                               gene_symbol = c("VCAN","FN1"))

## End(Not run)

IceQueen1996/spongeAPI documentation built on March 8, 2021, 8:33 p.m.