get_miRNAOccurences: Occurences of Sponges miRNAs

In IceQueen1996/spongeAPI: User Friendly Application Of The SPONGE API

Description

Get all mirna involved in cancer type/dataset of interest occuring a certain amout of times.

Usage

get_miRNAOccurences(
  disease_name,
  mimat_number = NULL,
  hs_number = NULL,
  occurences = NULL,
  sorting = NULL,
  descending = TRUE,
  limit = 100,
  offset = NULL
)

Arguments

disease_name	Name of the specific cancer type/dataset. If default is set, all available datasets with corresponding informations are shown. Fuzzy search available.
mimat_number	A vector of mimat_number(s). If mimat_number is set, hs_number must be NULL.
hs_number	A vector of hs_number(s). If hs_number is set, mimat_number must be NULL.
occurences	Threshold of amount of contributions a miRNA should be considered.
sorting	Possibilities for sorting of the results. Possible values are "pValue", "mscor" or "correlation".
descending	Descending (TRUE, default) or ascending (FALSE) ordering of the results.
limit	Number of results that should be shown. Default value is 100 and can be up to 1000. For more results please use batches, the provided offset parameter or download the whole dataset.
offset	Starting point from where results should be shown.

Value

A data_frame with all miRNAs occuring at leat "occurences" times.

Examples

get_miRNAOccurences(disease_name="kidney clear cell carcinoma", occurences = 1000, limit = 10)

IceQueen1996/spongeAPI documentation built on March 8, 2021, 8:33 p.m.