get_miRNAOccurences: Occurences of Sponges miRNAs

Description Usage Arguments Value Examples

View source: R/occurences.R

Description

Get all mirna involved in cancer type/dataset of interest occuring a certain amout of times.

Usage

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get_miRNAOccurences(
  disease_name,
  mimat_number = NULL,
  hs_number = NULL,
  occurences = NULL,
  sorting = NULL,
  descending = TRUE,
  limit = 100,
  offset = NULL
)

Arguments

disease_name

Name of the specific cancer type/dataset. If default is set, all available datasets with corresponding informations are shown. Fuzzy search available.

mimat_number

A vector of mimat_number(s). If mimat_number is set, hs_number must be NULL.

hs_number

A vector of hs_number(s). If hs_number is set, mimat_number must be NULL.

occurences

Threshold of amount of contributions a miRNA should be considered.

sorting

Possibilities for sorting of the results. Possible values are "pValue", "mscor" or "correlation".

descending

Descending (TRUE, default) or ascending (FALSE) ordering of the results.

limit

Number of results that should be shown. Default value is 100 and can be up to 1000. For more results please use batches, the provided offset parameter or download the whole dataset.

offset

Starting point from where results should be shown.

Value

A data_frame with all miRNAs occuring at leat "occurences" times.

Examples

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get_miRNAOccurences(disease_name="kidney clear cell carcinoma", occurences = 1000, limit = 10)

IceQueen1996/spongeAPI documentation built on March 8, 2021, 8:33 p.m.