ideo-class | R Documentation |
Title Ceate single ideogram ggplot object.
ideo object with ggplot layer and meta information about the ideogram, the highlight region and the plot object.
geom_ideobody
list. ggplot layer list for ideogram presentation.
geom_tick
list. ggplot layer list for hightlight region of ideogram.
chr
character. chromosme name of ideogram, starts with "chr".
height
numeric. single ideogram height (horizontal layout).
xdrift
numeric. x axis drift from 0.
ydrift
numeric. y axis drift from 0.
chr_start
numeric. chromosome start based on annotaion.
chr_end
numeric. chromosome end based on annotaion.
.plot_scale
numeric. scale compression level from real annotation to ggplot presented object.
.ideo_left
numeric. leftmost coordinate of ideogram object (horizontal layout).
.ideo_right
numeric. rightmost coordinate of ideogram object (horizontal layout).
.tick_top
numeric. topmost coordinate of ideogram object (horizontal layout, if highlight region/tick added).
.tick_bot
numeric. bottommost coordinate of ideogram object (horizontal layout, if highlight region/tick added).
.leftregion
numeric. start of highlight region (orginal coordinate).
.rightregion
numeric. end of highlight region (orginal coordinate).
NULL
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