ideo-class: Title Ceate single ideogram ggplot object.

In Irenexzwen/gginteract: Pairend reads interaction visualization with customized ggplot object

Title Ceate single ideogram ggplot object.

Description

Title Ceate single ideogram ggplot object.

Value

ideo object with ggplot layer and meta information about the ideogram, the highlight region and the plot object.

Slots

geom_ideobody

list. ggplot layer list for ideogram presentation.

geom_tick

list. ggplot layer list for hightlight region of ideogram.

chr

character. chromosme name of ideogram, starts with "chr".

height

numeric. single ideogram height (horizontal layout).

xdrift

numeric. x axis drift from 0.

ydrift

numeric. y axis drift from 0.

chr_start

numeric. chromosome start based on annotaion.

chr_end

numeric. chromosome end based on annotaion.

.plot_scale

numeric. scale compression level from real annotation to ggplot presented object.

.ideo_left

numeric. leftmost coordinate of ideogram object (horizontal layout).

.ideo_right

numeric. rightmost coordinate of ideogram object (horizontal layout).

.tick_top

numeric. topmost coordinate of ideogram object (horizontal layout, if highlight region/tick added).

.tick_bot

numeric. bottommost coordinate of ideogram object (horizontal layout, if highlight region/tick added).

.leftregion

numeric. start of highlight region (orginal coordinate).

.rightregion

numeric. end of highlight region (orginal coordinate).

Examples

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Irenexzwen/gginteract documentation built on Feb. 27, 2023, 3:51 p.m.