pairend_plot: Title Pairend interaction plot

In Irenexzwen/gginteract: Pairend reads interaction visualization with customized ggplot object

Title Pairend interaction plot

Description

Title Pairend interaction plot

Usage

pairend_plot(GENE1_anno, GENE2_anno, R1, R2, GENE1_COLOR = "#deb210",
  GENE2_COLOR = "#668ed1", genename1 = "", genename2 = "",
  xdrift = 0, ydrift = 0, VEXON = 10, genome = "hg38")

Arguments

GENE1_anno	Dataframe, a bed file format dataframe for gene1. each row represents an exon with chr, start, end.
GENE2_anno	Dataframe, a bed file format dataframe for gene2. each row represents an exon with chr, start, end.
R1	Dataframe, a bed file format dataframe for Read1 (first end) bed file.
R2	Dataframe, a bed file format dataframe for Read2 (second end) bed file.
GENE1_COLOR	character, color of left gene. In R, colors can be specified either by name e.g col = "red" or as a hexadecimal RGB triplet
GENE2_COLOR	character, color of right gene. In R, colors can be specified either by name e.g col = "red" or as a hexadecimal RGB triplet
xdrift	numeric. x axis drift from 0.
ydrift	numeric. y axis drift from 0.
VEXON	numeric. verticle height of exon.
genome	String. Genome version eg."hg38","mm10","mm20". default "hg38"

Value

ggplot object of pairend interaction plot

Examples

data(GENE1_anno,GENE2_anno,R1,R2)
pairend <- pairend_plot(GENE1_anno,GENE2_anno,R1,R2)

Irenexzwen/gginteract documentation built on Feb. 27, 2023, 3:51 p.m.