pairend_inter: Title pair-end inter skeleton

In Irenexzwen/gginteract: Pairend reads interaction visualization with customized ggplot object

Title pair-end inter skeleton

Description

Title pair-end inter skeleton

Usage

pairend_inter(GENE1_anno, GENE2_anno, R1, R2, GENE1_COLOR = "#deb210",
  GENE2_COLOR = "#668ed1", xdrift = 0, ydrift = 0, VEXON = 10,
  genename1 = "", genename2 = "")

Arguments

GENE1_anno	Dataframe, a bed file format dataframe for gene1. each row represents an exon with chr, start, end.
GENE2_anno	Dataframe, a bed file format dataframe for gene2. each row represents an exon with chr, start, end.
R1	Dataframe, a bed file format dataframe for Read1 (first end) bed file.
R2	Dataframe, a bed file format dataframe for Read2 (second end) bed file.
GENE1_COLOR	String, with default "#deb210".
GENE2_COLOR	string, with default "#668ed1".
xdrift	numeric. x axis drift from 0.
ydrift	numeric. y axis drift from 0.
VEXON	numeric. verticle height of exon.

Value

pair-end inter skeleton, ggplot object

Examples

data(GENE1_anno,GENE2_anno,R1,R2)
pairend_skeleton <- pairend_inter(GENE1_anno,GENE2_anno,R1,R2)
ggplot()+pairend_skeleton@geom_pair

Irenexzwen/gginteract documentation built on Feb. 27, 2023, 3:51 p.m.