para-class: Title Parallel fashion interaction plot A plot skeleton. Two...

In Irenexzwen/gginteract: Pairend reads interaction visualization with customized ggplot object

Title Parallel fashion interaction plot A plot skeleton. Two interacted genes lie in up and bottom in a parallel fashion, where interaction identified from pairend sequence will be presented as polygon connected regions.

Description

Title Parallel fashion interaction plot A plot skeleton. Two interacted genes lie in up and bottom in a parallel fashion, where interaction identified from pairend sequence will be presented as polygon connected regions.

Value

para obj.

Slots

geom_para

list. geom layer list.

genetop

gene_anno. gene annotation object for the top gene.

genebot

gene_anno. gene annotation object for the bottom gene.

.TopLeft_x

numeric. top left coordinates of the ggplot object. Here top left also indicates the left coord of the gene top.

.TopRight_x

numeric. top right coordinates of the ggplot object. Here top right also indicates the right coord of the gene top.

.BotLeft_x

numeric. bottom left coordinates of the ggplot object. Here botleft also indicates the left coord of the bottom gene.

.BotRight_x

numeric. bottom right coordinates of the ggplot object. Here botright also indicates the right coord of the bottom gene.

.Top_y

numeric. top coordinates of the ggplot object.

.Bot_y

numeric. bottom coordinates of the ggplot object.

.Topcolor

character. top gene color.

.Botcolor

character. bottom gene color.

.VEXON

numeric. exon veriticle height.

.VGAP

numeric. verticle distance between genetop and gene bottom.

Examples

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Irenexzwen/gginteract documentation built on Feb. 27, 2023, 3:51 p.m.