para-class | R Documentation |
Title Parallel fashion interaction plot A plot skeleton. Two interacted genes lie in up and bottom in a parallel fashion, where interaction identified from pairend sequence will be presented as polygon connected regions.
para obj.
geom_para
list. geom layer list.
genetop
gene_anno. gene annotation object for the top gene.
genebot
gene_anno. gene annotation object for the bottom gene.
.TopLeft_x
numeric. top left coordinates of the ggplot object. Here top left also indicates the left coord of the gene top.
.TopRight_x
numeric. top right coordinates of the ggplot object. Here top right also indicates the right coord of the gene top.
.BotLeft_x
numeric. bottom left coordinates of the ggplot object. Here botleft also indicates the left coord of the bottom gene.
.BotRight_x
numeric. bottom right coordinates of the ggplot object. Here botright also indicates the right coord of the bottom gene.
.Top_y
numeric. top coordinates of the ggplot object.
.Bot_y
numeric. bottom coordinates of the ggplot object.
.Topcolor
character. top gene color.
.Botcolor
character. bottom gene color.
.VEXON
numeric. exon veriticle height.
.VGAP
numeric. verticle distance between genetop and gene bottom.
Null
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