JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information
This pacakge provides an interface to estimate transcript abundances of any samples quantified by the aligner rail. This method is a non negative least squares estimation that calculates the number of reads that originated from each transcript of the coding portion of the GencodeV25 transcriptome. The model does not require raw aligned bam files, but is content with compressed coverage statistics primarily stored in bigwig formats.
Getting started
Browse package contents
Package details |
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| Author | Jack Fu <jmfu@jhsph.edu> |
| Bioconductor views | Coverage Preprocessing RNASeq Sequencing StatisticalMethod |
| Maintainer | Jack Fu <jmfu@jhsph.edu> |
| License | Artistic-2.0 |
| Version | 0.99.7 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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