Files in Jerby-Lab/opipes
What the Package Does (One Line, Title Case)
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/basics.R
R/cell_type_assignments.R
R/imageProcessing.R
R/scRNA.R
R/seurat_wrappers.R
README.md
bash/download_data/how
bash/download_data/run.sh
bash/process_rna/how
bash/process_rna/nextflow_wrapper.sh
bash/process_rna/rnaseq.config
bash/process_rna/rnaseq_curtis.config
bash/process_rna/unzip.sh
man/apply.HLM.Rd
man/apply.formula.HLM.Rd
man/average.mat.rows.Rd
man/average.mat.rows.parallel.Rd
man/cap_object.Rd
man/center.matrix.Rd
man/cluster.Rd
man/colMax.Rd
man/colMin.Rd
man/discretize.prvt.Rd
man/embed.Rd
man/formula.HLM.Rd
man/get.OE.Rd
man/get.OE1.Rd
man/get.binary.scores.Rd
man/get.mat.Rd
man/get.p.zscores.Rd
man/get.top.cor.Rd
man/get.top.elements.Rd
man/intersect.list1.Rd
man/labels.mat.2.logical.mat.Rd
man/prep4OE.Rd
man/recon_loss.Rd
man/rgb2hex.Rd
man/rowMax.Rd
man/rowMin.Rd
man/run_pca.Rd
man/sample.per.label.Rd
man/scRNA_cluster.annotation.HG.Rd
man/scRNA_cluster.annotation.ttest.Rd
man/scRNA_markers_assign.Rd
man/scRNA_markers_subtype_assign.Rd
man/scale_and_center.Rd
man/seuratify.Rd
man/spatial_sample_visualization.Rd
man/spearman.cor.Rd
man/std_preprocess.Rd
man/subsample.Rd
man/subset_list.Rd
man/t.test.mat.Rd
man/transfer_data_list_to_so.Rd
man/umap_tsne.Rd
man/var_explained_seurat.Rd
opipes.Rproj
vignettes/cell_type_assignments.Rmd
vignettes/cell_type_assignments.html
vignettes/images.Rmd
vignettes/images.html
